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dc.contributor.authorMuktar, Meki S.
dc.contributor.authorTeshome, Abel
dc.contributor.authorHanson, Jean
dc.contributor.authorNegawo, Alemayehu T.
dc.contributor.authorHabte, Ermias
dc.contributor.authorDomelevo Entfellner, Jean-Baka
dc.contributor.authorLee, Ki-Won
dc.contributor.authorJones, Chris S.
dc.date.accessioned2020-07-02T14:57:18Z
dc.date.available2020-07-02T14:57:18Z
dc.date.issued2019-05-06
dc.identifier.citationMuktar, M.S., Teshome, A., Hanson, J. et al. Genotyping by sequencing provides new insights into the diversity of Napier grass (Cenchrus purpureus) and reveals variation in genome-wide LD patterns between collections. Sci Rep 9, 6936 (2019). https://doi.org/10.1038/s41598-019-43406-0en_US
dc.identifier.issn2045-2322
dc.identifier.urihttp://hdl.handle.net/11019/2134
dc.descriptionpeer-revieweden_US
dc.description.abstractNapier grass is an important tropical forage-grass and of growing potential as an energy crop. One-hundred-five Napier grass accessions, encompassing two independent collections, were subjected to genotyping by sequencing which generated a set of high-density genome-wide markers together with short sequence reads. The reads, averaging 54 nucleotides, were mapped to the pearl millet genome and the closest genes and annotation information were used to select candidate genes linked to key forage traits. 980 highly polymorphic SNP markers, distributed across the genome, were used to assess population structure and diversity with seven-subgroups identified. A few representative accessions were selected with the objective of distributing subsets of a manageable size for further evaluation. Genome-wide linkage disequilibrium (LD) analyses revealed a fast LD-decay, on average 2.54 kbp, in the combined population with a slower LD-decay in the ILRI collection compared with the EMBRAPA collection, the significance of which is discussed. This initiative generated high-density markers with a good distribution across the genome. The diversity analysis revealed the existence of a substantial amount of variation in the ILRI collection and identified some unique materials from the EMBRAPA collection, demonstrating the potential of the overall population for further genetic and marker-trait-association studies.en_US
dc.language.isoenen_US
dc.publisherSpringer Natureen_US
dc.relation.ispartofseriesScientific Reports;Vol. 9 (1)
dc.rightsAttribution-NonCommercial-ShareAlike 3.0 United States*
dc.rights.urihttp://creativecommons.org/licenses/by-nc-sa/3.0/us/*
dc.subjectGenotypingen_US
dc.subjectNapier grassen_US
dc.subjectCenchrus purpureusen_US
dc.subjectLD patternsen_US
dc.titleGenotyping by sequencing provides new insights into the diversity of Napier grass (Cenchrus purpureus) and reveals variation in genome-wide LD patterns between collectionsen_US
dc.typeArticleen_US
dc.identifier.doihttps://doi.org/10.1038/s41598-019-43406-0
dc.contributor.sponsorRural Development Administration of the Republic of Koreaen_US
dc.contributor.sponsorGermany-GIZ-Deutsche Gesellschaft für Internationale Zusammenarbeiten_US
dc.contributor.sponsorGap Funding for Forage Selection and Breeding Activitiesen_US
dc.contributor.sponsorFederal Ministry for Economic Cooperation and Developmenten_US
dc.contributor.sponsorGenebank uplift Funding, Germanyen_US
dc.contributor.sponsorCGIAR Research Program on Livestocken_US
dc.source.volume9
dc.source.issue1
refterms.dateFOA2020-07-02T14:57:18Z


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