• Login
    View Item 
    •   T-Stór
    • Other
    • Teagasc publications in Biomed Central
    • View Item
    •   T-Stór
    • Other
    • Teagasc publications in Biomed Central
    • View Item
    JavaScript is disabled for your browser. Some features of this site may not work without it.

    Browse

    All of T-StórCommunitiesPublication DateAuthorsTitlesSubjectsFunderThis CollectionPublication DateAuthorsTitlesSubjectsFunderProfilesView

    My Account

    LoginRegister

    Information

    Deposit AgreementLicense

    Statistics

    Most Popular ItemsStatistics by CountryMost Popular Authors

    Genome sequences and comparative genomics of two Lactobacillus ruminis strains from the bovine and human intestinal tracts

    • CSV
    • RefMan
    • EndNote
    • BibTex
    • RefWorks
    Thumbnail
    Name:
    1475-2859-10-S1-S13.pdf
    Size:
    1.562Mb
    Format:
    PDF
    Download
    Thumbnail
    Name:
    1475-2859-10-S1-S13-S1.PDF
    Size:
    33.63Kb
    Format:
    PDF
    Download
    Thumbnail
    Name:
    1475-2859-10-S1-S13-S2.PDF
    Size:
    116.8Kb
    Format:
    PDF
    Download
    Thumbnail
    Name:
    1475-2859-10-S1-S13-S3.PDF
    Size:
    484.8Kb
    Format:
    PDF
    Download
    Thumbnail
    Name:
    1475-2859-10-S1-S13-S4.PDF
    Size:
    644.3Kb
    Format:
    PDF
    Download
    Thumbnail
    Name:
    1475-2859-10-S1-S13-S5.PDF
    Size:
    550.9Kb
    Format:
    PDF
    Download
    Thumbnail
    Name:
    1475-2859-10-S1-S13-S6.PDF
    Size:
    480.6Kb
    Format:
    PDF
    Download
    Thumbnail
    Name:
    1475-2859-10-S1-S13-S7.PDF
    Size:
    41.30Kb
    Format:
    PDF
    Download
    Thumbnail
    Name:
    1475-2859-10-S1-S13-S8.PDF
    Size:
    112.1Kb
    Format:
    PDF
    Download
    Thumbnail
    Name:
    1475-2859-10-S1-S13-S9.PDF
    Size:
    8.408Kb
    Format:
    PDF
    Download
    Thumbnail
    Name:
    1475-2859-10-S1-S13-S10.PDF
    Size:
    10.05Kb
    Format:
    PDF
    Download
    Thumbnail
    Name:
    1475-2859-10-S1-S13-S11.PDF
    Size:
    330.9Kb
    Format:
    PDF
    Download
    Thumbnail
    Name:
    1475-2859-10-S1-S13-S12.PDF
    Size:
    41.69Kb
    Format:
    PDF
    Download
    Thumbnail
    Name:
    1475-2859-10-S1-S13-S13.PDF
    Size:
    195.8Kb
    Format:
    PDF
    Download
    Thumbnail
    Name:
    1475-2859-10-S1-S13-S14.PDF
    Size:
    202.6Kb
    Format:
    PDF
    Download
    Thumbnail
    Name:
    1475-2859-10-S1-S13-S15.PDF
    Size:
    169.7Kb
    Format:
    PDF
    Download
    Thumbnail
    Name:
    1475-2859-10-S1-S13-S16.PDF
    Size:
    107.4Kb
    Format:
    PDF
    Download
    View more filesView fewer files
    Author
    Forde, Brian M
    Neville, B. Anne
    O'Donnell, Michelle M.
    Riboulet-Bisson, Eliette
    Claesson, Marcus J.
    Coghlan, Avril
    Ross, R Paul
    O'Toole, Paul W.
    Keyword
    Lactobacillus ruminis
    Genomic analysis
    Date
    30/08/2011
    
    Metadata
    Show full item record
    Statistics
    Display Item Statistics
    URI
    http://hdl.handle.net/11019/251
    Citation
    Forde, Brian et al. Genome sequences and comparative genomics of two Lactobacillus ruminis strains from the bovine and human intestinal tracts. Microbial Cell Factories. 2011 Aug 30;10(Suppl 1):S13
    Abstract
    Background: The genus Lactobacillus is characterized by an extraordinary degree of phenotypic and genotypic diversity, which recent genomic analyses have further highlighted. However, the choice of species for sequencing has been non-random and unequal in distribution, with only a single representative genome from the L. salivarius clade available to date. Furthermore, there is no data to facilitate a functional genomic analysis of motility in the lactobacilli, a trait that is restricted to the L. salivarius clade. Results: The 2.06 Mb genome of the bovine isolate Lactobacillus ruminis ATCC 27782 comprises a single circular chromosome, and has a G+C content of 44.4%. In silico analysis identified 1901 coding sequences, including genes for a pediocin-like bacteriocin, a single large exopolysaccharide-related cluster, two sortase enzymes, two CRISPR loci and numerous IS elements and pseudogenes. A cluster of genes related to a putative pilin was identified, and shown to be transcribed in vitro. A high quality draft assembly of the genome of a second L. ruminis strain, ATCC 25644 isolated from humans, suggested a slightly larger genome of 2.138 Mb, that exhibited a high degree of synteny with the ATCC 27782 genome. In contrast, comparative analysis of L. ruminis and L. salivarius identified a lack of long-range synteny between these closely related species. Comparison of the L. salivarius clade core proteins with those of nine other Lactobacillus species distributed across 4 major phylogenetic groups identified the set of shared proteins, and proteins unique to each group. Conclusions: The genome of L. ruminis provides a comparative tool for directing functional analyses of other members of the L. salivarius clade, and it increases understanding of the divergence of this distinct Lactobacillus lineage from other commensal lactobacilli. The genome sequence provides a definitive resource to facilitate investigation of the genetics, biochemistry and host interactions of these motile intestinal lactobacilli.
    ae974a485f413a2113503eed53cd6c53
    http://dx.doi.org/10.1186/1475-2859-10-S1-S13
    Scopus Count
    Collections
    Food Biosciences
    Teagasc publications in Biomed Central
    Teagasc publications in Biomed Central
    Teagasc publications in Biomed Central

    entitlement

     
    DSpace software copyright © 2002-2017  DuraSpace
    Quick Guide | Contact Us | Send Feedback
    Open Repository is a service operated by 
    Atmire NV
     

    Export search results

    The export option will allow you to export the current search results of the entered query to a file. Different formats are available for download. To export the items, click on the button corresponding with the preferred download format.

    By default, clicking on the export buttons will result in a download of the allowed maximum amount of items.

    To select a subset of the search results, click "Selective Export" button and make a selection of the items you want to export. The amount of items that can be exported at once is similarly restricted as the full export.

    After making a selection, click one of the export format buttons. The amount of items that will be exported is indicated in the bubble next to export format.